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annotate test-data/toto.txt @ 6:3e93d920163b draft

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planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
author estrain
date Thu, 12 Mar 2026 20:38:44 +0000
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3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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1 Protein identifier Contig id Start Stop Strand Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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2 fig|6666666.1033322.peg.2150 contig00015 55521 56966 - cls_H215H cardiolipin synthase Cls [WILDTYPE] core AMR POINT LIPOPEPTIDE DAPTOMYCIN POINTP 481 481 100.00 99.79 481 WP_002413481.1 cardiolipin synthase Cls NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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3 fig|6666666.1033322.peg.2150 contig00015 55521 56966 - cls_NFQ77NFQ cardiolipin synthase Cls [WILDTYPE] core AMR POINT LIPOPEPTIDE DAPTOMYCIN POINTP 481 481 100.00 99.79 481 WP_002413481.1 cardiolipin synthase Cls NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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4 fig|6666666.1033322.peg.2150 contig00015 55521 56966 - cls_R218R cardiolipin synthase Cls [WILDTYPE] core AMR POINT LIPOPEPTIDE DAPTOMYCIN POINTP 481 481 100.00 99.79 481 WP_002413481.1 cardiolipin synthase Cls NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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5 fig|6666666.1033322.peg.2150 contig00015 55521 56966 - cls_R267R cardiolipin synthase Cls [WILDTYPE] core AMR POINT LIPOPEPTIDE DAPTOMYCIN POINTP 481 481 100.00 99.79 481 WP_002413481.1 cardiolipin synthase Cls NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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6 fig|6666666.1033322.peg.2150 contig00015 55521 56966 - cls_T261A cardiolipin synthase Cls [UNKNOWN] core AMR POINT NA NA POINTP 481 481 100.00 99.79 481 WP_002413481.1 cardiolipin synthase Cls NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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7 fig|6666666.1033322.peg.2386 contig00019 47878 48609 + liaF_R177R three-component signaling pathway regulator LiaF [WILDTYPE] core AMR POINT LIPOPEPTIDE DAPTOMYCIN POINTP 243 243 100.00 100.00 243 WP_002381168.1 three-component signaling pathway regulator LiaF NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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8 fig|6666666.1033322.peg.2386 contig00019 47878 48609 + liaF_T194T three-component signaling pathway regulator LiaF [WILDTYPE] core AMR POINT LIPOPEPTIDE DAPTOMYCIN POINTP 243 243 100.00 100.00 243 WP_002381168.1 three-component signaling pathway regulator LiaF NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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9 fig|6666666.1033322.peg.2387 contig00019 48606 49709 + liaS_A180A sensor histidine kinase LiaS [WILDTYPE] core AMR POINT LIPOPEPTIDE DAPTOMYCIN POINTP 367 367 100.00 100.00 367 WP_002365182.1 sensor histidine kinase LiaS NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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10 fig|6666666.1033322.peg.2388 contig00019 49684 50316 + liaR_D191D response regulator transcription factor LiaR [WILDTYPE] core AMR POINT LIPOPEPTIDE DAPTOMYCIN POINTP 210 210 100.00 100.00 210 WP_002355137.1 response regulator transcription factor LiaR NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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11 NA contig00052 108 1642 + 23S_GA375AG Enterococcus faecalis 23S ribosomal RNA [UNKNOWN] core AMR POINT NA NA POINTN 1535 2896 53.00 99.87 1535 NZ_CP041738.1:216195-219090 23S ribosomal RNA NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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12 NA contig00053 1 1360 + 23S_G2505G Enterococcus faecalis 23S ribosomal RNA [WILDTYPE] core AMR POINT OXAZOLIDINONE LINEZOLID POINTN 1360 2896 46.96 99.93 1360 NZ_CP041738.1:216195-219090 23S ribosomal RNA NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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13 NA contig00053 1 1360 + 23S_G2576G Enterococcus faecalis 23S ribosomal RNA [WILDTYPE] core AMR POINT OXAZOLIDINONE LINEZOLID POINTN 1360 2896 46.96 99.93 1360 NZ_CP041738.1:216195-219090 23S ribosomal RNA NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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14 NA contig00053 1 1360 + 23S_T2825C Enterococcus faecalis 23S ribosomal RNA [UNKNOWN] core AMR POINT NA NA POINTN 1360 2896 46.96 99.93 1360 NZ_CP041738.1:216195-219090 23S ribosomal RNA NA NA