Mercurial > repos > estrain > amrfinderplus_db

annotate test-data/input_ncbi.faa @ 7:de2011569700 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 50e7d8610c04e06eb15f09131d6a2d1b204de6a9
author galaxytrakr
date Fri, 13 Mar 2026 15:43:54 +0000
parents 3e93d920163b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
6
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
1 >blaTEM-156
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
2 MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLS
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
3 RVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNIGDHVTRL
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
4 DRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGS
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
5 RGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
6 >blaPDC-114_blast BLAST (100% length, but 1 mismatch)
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
7 MRDTRFPCLCGIAASTLLFATTPAIAGEAPADRLKALVDAAVQPVMKANDIPGLAVAISLKGEPHYFSYGLASKEDGRRV
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
8 TPETLFEIGSVSKTFTATLAGYALTQDKMRLDDRASQHWPALVGSRFDGISLLDLATYTAGGLPLQFPDSVQKDQAQIRD
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
9 YYRQWQPTYAPGSQRLYSNPSIGLFGYLAARSLGQPFERLMEQQVFPALGLEQTHLDVPEAALAQYAQGYGKDDRPLRAG
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
10 PGPLDAEGYGVKTSAADLLRFVDANLHPERLDRPWAQALDATHRGYYKVGDMTQGLGWEAYDWPISLKRLQAGNSTPMAL
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
11 QPHRIARLPAPQALEGQRLLNKTGSTNGFGAYVAFVPGRDLGLVILANRNYPNAERVKIAYAILSGLEQQGKVPLKR
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
12 >blaOXA-436_partial (Should be partial OXA-48 family
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
13 MRALALSAVLMVTTMIGMPAVAKEWQENKSWNAHFSEHKTQGVVVLWNENTQQGFTNDLKRANQAFLPASTFKIPNSLIA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
14 LDLGVVKDEHQVFKWDGQTRDIAAWNRDHDLITAMKYSVVPVYQEFARQIGEARMSKMLHAFDYGNEDISGNLDSFWLDG
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
15 GIRISATQQIAFLRKLYHNKLHVSERSQRIVKQAMLTEANADYIIRAKTGYSVRIEPKIGWWVGWIELDDNVW
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
16 >vanG
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
17 MQNKKIAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWFEDSKN
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
18 LCPVVVSQNRSVKGFLEIASDKYRIIKVDLVFPVLHGKNGENGTLQGIFELAGIPVVGCDTLSSALCMDK
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
19 DRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAF
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
20 EHDTEVIVEETINGFEVGCAVLGIDELIVGRVDEIELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQ
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
21 EAAVTIYKALGCSGFSRVDMFYTPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLIGLYVE
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
22 >gyrA T86I Campylobacter
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
23 MENIFSKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDAAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKD
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
24 IDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDASLEE
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
25 IMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIEQIAE
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
26 LVKEKQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLE
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
27 LLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSEL
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
28 QANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIED
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
29 DYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFV
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
30 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEY
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
31 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAV
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
32 TKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQS
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
33 RGGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSI
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
34 AKCPKEENDEDELSDENFGLDL
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
35 >50S_L22 Campylobacter 50S_L22:A103V
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
36 MSKALIKFIRLSSTKARLIAREVQGMNAELAMASLKFMPNKGAKYIANAISSAVANGGFEANEVIVKSCRVDAAAVLKRF
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
37 RPRARGSASRIRKPTSHILVEVVKAEVKAEEKKTVAKKTTTTKAPAKKTTSTKKATAKKES
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
38
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
39 >nimIJ_hmm WP_027455679.1 NimIJ family nitroimidazole resistance protein [Prevotella brevis]
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
40 MSEFREMRRKRQQLTDADSIAVLQKATSGTLALLGDNDYPYAVPISYVYDNGKLYFHSAMAGHKVDAIRR
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
41 CNKASFCVIEKDDVRPEKYTTYFRSVIAFGRIEIVEDEAEKRTIMHMMGNRFNPNHDDALQKELESGLAH
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
42 MLAIRMDIEHLTGKEAIELVRQRGGN
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
43
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
44 >aph3pp-Ib_partial_5p_neg NZ_QKNQ01000001.1 Providencia rettgeri strain Pret_2032, whole genome shotgun sequence 2160922-2162737 150-1527 704-137
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
45 IRKLKEPPLNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASRRGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAWPSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLLARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADL
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
46
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
47 >sul2_partial_3p_neg NZ_QKNQ01000001.1 Providencia rettgeri strain Pret_2032, whole genome shotgun sequence 2160922-2162737 150-1377 2-667
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
48 SSNPDAAPVSSDTEIERIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAYLNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAALTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRALTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
49
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
50 >blaTEM-internal_stop
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
51 HFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVNYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSCVDAG
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
52 QEQLGRSIHYSQNDLVEYSPVTEKHLTDGMTLRELCSAAITMSDNTAANLLLTTIGGPKELTA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
53
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
54 >qacR-curated_blast (ADK23698.1)
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
55 MKLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQI
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
56 KCKTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEW
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
57 CINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLSK
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
58
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
59 >arsR-suppressed-in-escherichia BAE77793.1 arsR_K-12 As(III)-sensing_metalloregulatory_transcriptional_repressor_ArsR
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
60 MSFLLPIQLFKILADETRLGIVLLLSELGELCVCDLCTALDQSQPKISRHLALLRESGLLLDRKQGKWVHYRLSPHIPAW
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
61 AAKIIDEAWRCEQEKVQAIVRNLARQNCSGDSKNICS
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
62
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
63 >emrD3-suppressed-in-vibrio ABQ18953.1
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
64 MKTKPSLWLMVIMLMFPQIVETIYSPVLGSIARSFSVSDAQAAQTLSVYFLAFALGVVIWGVLADKWGRRPTMLVGLLIY
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
65 GSATFIAMQTDSFTILMLARVFSAFGIAVGSVVTQTILRDVFSGHELRKVFSLMGIGISISPVLGMLLGGQLAFAGGHQL
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
66 VFLALFFIALVLFVYNLCQLPETQQVKPKIALGCLVARMFKDRQVLLSALLVALYNVALFSYYQLGAFIFSDLGLDAEQF
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
67 GYSGIALGLGSLIGSFLNKTLLAKQVPQRALLLLAALLLIMGTIGVSLTLDSIGFVAAMILVVIAYGMAIPNILSTALVE
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
68 YKSQAGSAGALFGLLYYLLIGSGLALTGLVQRLGVVLLMCAGITLLATLARSSHIARLP
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
69
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
70 >pmrB_C84R
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
71 MHFLRRPISLRQRLILTIGAILLVFELISVFWLWHESTEQIQLFEQALRDNRNNDRHIMREIREAVASLIVPGVFMVSLTLFIRYQAVRRITRPLAELQKELEARTADNLTPIAIHSATLEIEAVVSALNDLVSRLTSTLDNERLFTADVAHELRTPLAGVRLHLELLAKTHHIDVAPLVARLDQMMESVSQLLQLARAGQSFSSGNYQHVKLLEDVILPSYDELSTMLDQRQQTLLLPESAADITVQGDATLLRMLLRNLVENAHRYSPQGSNIMIKLQEDDGAVMAVEDEGPGIDESKCGELSKAFVRMDSRYGGIGLGLSIVSRITQLHHGQFFLQNRQETSGTRAWVRLKKDQYVANQI
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
72
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
73 >nfsA_R15C_K141STOP
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
estrain
parents:
diff changeset
74 MTPTIELICGHRSICHFTDEPISEAQREAIINSARATSSSSFLQYSSIIRITDKALREELVTLTGGQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLLLGVVDTAMMAQNALIAAESLGLGGVYIGGLRNNIEAVT