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annotate test-data/test_4/amrfinderplus_results.tsv @ 7:de2011569700 draft default tip

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planemo upload commit 50e7d8610c04e06eb15f09131d6a2d1b204de6a9
author galaxytrakr
date Fri, 13 Mar 2026 15:43:54 +0000
parents 3e93d920163b
children
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6
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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1 Protein identifier Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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2 IDOBJL_13105 optrA ABC-F type ribosomal protection protein OptrA core AMR AMR PHENICOL/OXAZOLIDINONE FLORFENICOL/OXAZOLIDINONE BLASTP 637 655 97.25 100.00 637 WP_063854496.1 ABC-F type ribosomal protection protein OptrA NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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3 IDOBJL_14770 aph(3')-IIIa aminoglycoside O-phosphotransferase APH(3')-IIIa core AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN BLASTP 264 264 100.00 99.62 264 WP_063841495.1 aminoglycoside O-phosphotransferase APH(3')-IIIa NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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4 IDOBJL_14775 sat4 streptothricin N-acetyltransferase Sat4 core AMR AMR STREPTOTHRICIN STREPTOTHRICIN BLASTP 180 180 100.00 99.44 180 WP_063854934.1 streptothricin N-acetyltransferase Sat4 NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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5 IDOBJL_14820 tet(M) tetracycline resistance ribosomal protection protein Tet(M) core AMR AMR TETRACYCLINE TETRACYCLINE BLASTP 639 639 100.00 99.84 639 WP_063856395.1 tetracycline resistance ribosomal protection protein Tet(M) NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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6 IDOBJL_14830 erm(B) 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) core AMR AMR MACROLIDE MACROLIDE BLASTP 245 245 100.00 99.59 245 WP_063844601.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) NA NA
3e93d920163b planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
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7 IDOBJL_14880 tet(L) tetracycline efflux MFS transporter Tet(L) core AMR AMR TETRACYCLINE TETRACYCLINE BLASTP 458 458 100.00 99.78 458 WP_063856080.1 tetracycline efflux MFS transporter Tet(L) NA NA