Mercurial > repos > estrain > amrfinderplus_db

diff test-data/test_2/amrfinderplus_results.tsv @ 6:3e93d920163b draft

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planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
author estrain
date Thu, 12 Mar 2026 20:38:44 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_2/amrfinderplus_results.tsv	Thu Mar 12 20:38:44 2026 +0000
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+Name	Protein identifier	Contig id	Start	Stop	Strand	Gene symbol	Sequence name	Scope	Element type	Element subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference sequence	% Identity to reference sequence	Alignment length	Accession of closest sequence	Name of closest sequence	HMM id	HMM description	Hierarchy node
+test_2	NA	contig_26	6581	8545	+	optrA	ABC-F type ribosomal protection protein OptrA	core	AMR	AMR	PHENICOL/OXAZOLIDINONE	FLORFENICOL/OXAZOLIDINONE	EXACTX	655	655	100.00	100.00	655	WP_063854496.1	ABC-F type ribosomal protection protein OptrA	NA	NA	optrA