Mercurial > repos > estrain > amrfinderplus_db
diff test-data/test_9/amrfinderplus_results.tsv @ 6:3e93d920163b draft
planemo upload commit 3773c71b3fac75f58b5af497e19d54dca0d81dfd
| author | estrain |
|---|---|
| date | Thu, 12 Mar 2026 20:38:44 +0000 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_9/amrfinderplus_results.tsv Thu Mar 12 20:38:44 2026 +0000 @@ -0,0 +1,5 @@ +Name Protein identifier Contig id Start Stop Strand Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description Hierarchy node +test_5 NA contig00015 14824 15468 - tetA(46) tetracycline efflux ABC transporter Tet(46) subunit A core AMR AMR TETRACYCLINE TETRACYCLINE PARTIALX 215 574 37.63 27.48 222 WP_063856469.1 tetracycline efflux ABC transporter Tet(46) subunit A NA NA tetA(46) +test_5 NA contig00019 27227 29524 + mupB mupirocin-resistant isoleucine--tRNA ligase MupB core AMR AMR MUPIROCIN MUPIROCIN PARTIALX 766 1033 81.12 24.62 853 WP_063854488.1 mupirocin-resistant isoleucine--tRNA ligase MupB NA NA mupB +test_5 NA contig00019 39250 40965 + tetA(46) tetracycline efflux ABC transporter Tet(46) subunit A core AMR AMR TETRACYCLINE TETRACYCLINE BLASTX 572 574 99.48 25.08 594 WP_063856469.1 tetracycline efflux ABC transporter Tet(46) subunit A NA NA tetA(46) +test_5 NA contig00019 41181 42731 + tetA(46) tetracycline efflux ABC transporter Tet(46) subunit A core AMR AMR TETRACYCLINE TETRACYCLINE BLASTX 517 574 90.59 27.59 522 WP_063856469.1 tetracycline efflux ABC transporter Tet(46) subunit A NA NA tetA(46)