<tool id="amrformat" name="amrformat" version="0.0.1">
  <description>Format AMRFinder Output</description>
  <requirements>
  </requirements>

  <command detect_errors="exit_code"><![CDATA[

    perl $__tool_directory__/amrformat.pl $infile results.tsv 

  ]]></command>
    <inputs>
      <param name="infile" type="text" label="Select Input File"/>
    </inputs>
    <outputs>
      <data format="text" name="results.tsv" label="${tool.name} on ${on_string}" from_work_dir="*.tsv"/>
    </outputs>

    <help><![CDATA[

    ]]></help>
</tool>