estrain@1: <tool id="amrformat" name="amrformat" version="0.0.1">
estrain@3:   <description>Format AMRFinder Output</description>
estrain@1:   <requirements>
estrain@1:   </requirements>
estrain@1: 
estrain@1:   <command detect_errors="exit_code"><![CDATA[
estrain@1: 
estrain@2:     perl $__tool_directory__/amrformat.pl $infile results.tsv 
estrain@1: 
estrain@1:   ]]></command>
estrain@1:     <inputs>
estrain@5:       <param name="infile" type="data" format="tabular" label="Select Input File"/>
estrain@1:     </inputs>
estrain@1:     <outputs>
estrain@6:       <data format="tabular" name="results.tsv" label="${tool.name} on ${on_string}" from_work_dir="*.tsv"/>
estrain@1:     </outputs>
estrain@1: 
estrain@1:     <help><![CDATA[
estrain@1: 
estrain@1:     ]]></help>
estrain@1: </tool>