Mercurial > repos > estrain > data_manager_amrfinderplus

annotate data_manager/data_manager_amrfinderplus.xml @ 1:041f234a2d77 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit d4704f3c30eb441ff55cd913dfdc1c55197da3b1
author galaxytrakr
date Fri, 13 Nov 2026 12:16:08 +0000
parents 2986b488a62b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
041f234a2d77 planemo upload commit d4704f3c30eb441ff55cd913dfdc1c55197da3b1
galaxytrakr
parents: 0
diff changeset
1 <tool id="data_manager_amrfinderplus" name="AMRFinderPlus Data Manger" tool_type="manage_data" version="4.2.7" profile="20.03">
0
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
2 <requirements>
1
041f234a2d77 planemo upload commit d4704f3c30eb441ff55cd913dfdc1c55197da3b1
galaxytrakr
parents: 0
diff changeset
3 <requirement type="package" version="4.2.7">ncbi-amrfinderplus</requirement>
0
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
4 <requirement type="package" version="3.10.6">python</requirement>
1
041f234a2d77 planemo upload commit d4704f3c30eb441ff55cd913dfdc1c55197da3b1
galaxytrakr
parents: 0
diff changeset
5
0
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
6 </requirements>
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
7 <command detect_errors="exit_code"><![CDATA[
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
8 python '$__tool_directory__/data_manager_amrfinderplus.py' '$output_file'
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
9 ]]></command>
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
10 <inputs>
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
11 <param name="amrdbname" type="text" value="latest" label="Release Version - Note: only latest release is supported"/>
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
12 </inputs>
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
13 <outputs>
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
14 <data name="output_file" format="data_manager_json"/>
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
15 </outputs>
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
16 <tests>
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
17 <test>
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
18 </test>
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
19 </tests>
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
20 <help>
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
21 </help>
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
22 <citations>
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
23 </citations>
2986b488a62b planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
estrain
parents:
diff changeset
24 </tool>