Mercurial > repos > estrain > data_manager_amrfinderplus

diff data_manager_conf.xml @ 0:2986b488a62b draft default tip

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planemo upload commit 6f89f1ec5ad85eb9c08c0d48c77b8f8eadbdcaff
author estrain
date Thu, 12 Mar 2026 19:41:57 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_conf.xml	Thu Mar 12 19:41:57 2026 +0000
@@ -0,0 +1,28 @@
+<?xml version="1.0"?>
+<data_managers>
+  <data_manager
+      tool_file="data_manager/data_manager_amrfinderplus.xml"
+      id="data_manager_amrfinderplus"
+      tool_data_table_conf="tool_data_table_conf.xml.sample">
+
+    <data_table name="amrfinderplus_versioned_database">
+      <output>
+        <column name="value" />
+        <column name="name" />
+        <column name="path" output_ref="output_file">
+          <move type="directory" relativize_symlinks="True">
+            <source>${path}</source>
+            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">
+              amrfinderplus-db/${value}
+            </target>
+          </move>
+          <value_translation>
+            ${GALAXY_DATA_MANAGER_DATA_PATH}/amrfinderplus-db/${value}
+          </value_translation>
+          <value_translation type="function">abspath</value_translation>
+        </column>
+      </output>
+    </data_table>
+  </data_manager>
+</data_managers>
+