annotate data_manager_conf.xml @ 0:a9ff6184213f draft default tip

planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
author estrain
date Thu, 12 Mar 2026 20:06:31 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
1 <data_managers>
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
2 <data_manager tool_file="data_manager/data_manager_mlst.xml"
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
3 id="data_manager_mlst">
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
4 <data_table name="mlst">
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
5 <output>
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
6 <column name="value"/>
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
7 <column name="name"/>
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
8 <column name="path" output_ref="output_file">
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
9 <move type="directory" relativize_symlinks="True">
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
10 <source>${path}</source>
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mlst-db/${value}</target>
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
12 </move>
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mlst-db/${value}</value_translation>
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
14 <value_translation type="function">abspath</value_translation>
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
15 </column>
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
16 </output>
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
17 </data_table>
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
18 </data_manager>
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
19 </data_managers>
a9ff6184213f planemo upload commit bdb45cf3a98e21f5002866b6789a1457f521bf5d
estrain
parents:
diff changeset
20