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author estrain
date Fri, 31 Mar 2023 13:23:06 -0400
parents c665b3b47fc7
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<tool id="emmtyper" name="emm-typing of S. pyogenes" version="0.1.0">
    <requirements>
        <requirement type="package">emmtyper</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        emmtyper -o '$output1' '$input1'
    ]]></command>
    <inputs>
        <param type="data" name="input1" format="fasta" />
    </inputs>
    <outputs>
        <data name="output1" format="txt" from_work_dir="results.txt" />
    </outputs>
    <help><![CDATA[
    ]]></help>
    <citations>
        <citation type="bibtex">
@misc{githubemmtyper,
  author = {LastTODO, FirstTODO},
  year = {TODO},
  title = {emmtyper},
  publisher = {GitHub},
  journal = {GitHub repository},
  url = {https://github.com/MDU-PHL/emmtyper},
}</citation>
    </citations>
</tool>