Mercurial > repos > estrain > gtdbtk_classify_wf

annotate test-data/gtdbtk_database_versioned.loc.test @ 2:bca71d3aa1bf draft default tip

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planemo upload commit 21086bad5baa43e0d616b6942ded72a70840495d
author estrain
date Fri, 13 Mar 2026 11:56:54 +0000
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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bca71d3aa1bf planemo upload commit 21086bad5baa43e0d616b6942ded72a70840495d
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1 # This is a sample file distributed with Galaxy that enables tools
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2 # to use a directory of GTDB-Tk databases. The gtdbtk_databases.loc
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3 # file has this format (longer white space characters are TAB characters):
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4 #
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5 # <unique_build_id> <display_name> <version> <directory_path>
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6 #
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7 # So, for example, if you have the gtdbtk 202 stored in
bca71d3aa1bf planemo upload commit 21086bad5baa43e0d616b6942ded72a70840495d
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8 # /depot/data2/galaxy/gtdbtk/202/,
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9 # then the gtdbtk_databases.loc entry would look like this:
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10 #
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11 # release202 gtdbtk database release 202 /depot/data2/galaxy/gtdbtk/release202
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12 #
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13 # and your /depot/data2/galaxy/gtdbtk/release202 directory
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14 # would contain GTDB-Tk database files for release 202, sommething like this:
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15 #
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16 #drwxr-sr-x 3 gvk G-824019 4096 Apr 20 2021 fastani/
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17 #-rw-r--r-- 1 gvk G-824019 4810764 Apr 22 2021 manifest.tsv
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18 #drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 markers/
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19 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 masks/
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20 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 metadata/
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21 #drwxr-sr-x 2 gvk G-824019 4096 Apr 21 2021 mrca_red/
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22 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 msa/
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23 #drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 pplacer/
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24 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 radii/
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25 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 taxonomy/
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26 gtdbtk214 GTDB-Tk database 214 ${__HERE__}/gtdbtk214/