Mercurial > repos > estrain > metaspades
comparison write_tsv_script.py @ 0:292d633441ad draft default tip
planemo upload commit c251e9b174b5370300a209b2b4c5e2052976eb2d
| author | estrain |
|---|---|
| date | Fri, 13 Mar 2026 12:07:47 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:292d633441ad |
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| 1 #!/usr/bin/env python | |
| 2 | |
| 3 import re | |
| 4 import sys | |
| 5 | |
| 6 search_str = r"^>(NODE|\S+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*)(.*\$)?" | |
| 7 | |
| 8 replace_str = r"\1_\2\t\3\t\4" | |
| 9 | |
| 10 cmd = re.compile(search_str) | |
| 11 | |
| 12 sys.stdout.write("#name\tlength\tcoverage\n") | |
| 13 | |
| 14 for i, line in enumerate(sys.stdin): | |
| 15 if cmd.match(line): | |
| 16 sys.stdout.write(cmd.sub(replace_str, line)) |