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annotate amrfinderplus/test-data/test_prot.expected @ 10:e533cf6725bf tip

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author estrain
date Thu, 25 Jun 2020 16:21:48 -0400
parents 6cab26b67987
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estrain@4 1 Protein identifier Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description
estrain@4 2 aph3pp-Ib_partial_5p_neg aph(3'')-Ib aminoglycoside O-phosphotransferase APH(3'')-Ib core AMR AMR AMINOGLYCOSIDE STREPTOMYCIN PARTIALP 225 275 81.82 99.56 225 WP_109545041.1 aminoglycoside O-phosphotransferase APH(3'')-Ib NF032895.1 aminoglycoside O-phosphotransferase APH(3'')-Ib
estrain@4 3 blaOXA-436_partial blaOXA OXA-48 family class D beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALP 233 265 87.92 100.00 233 WP_058842180.1 OXA-48 family carbapenem-hydrolyzing class D beta-lactamase OXA-436 NF000387.2 OXA-48 family class D beta-lactamase
estrain@4 4 blaPDC-114_blast blaPDC PDC family class C beta-lactamase core AMR AMR BETA-LACTAM CEPHALOSPORIN BLASTP 397 397 100.00 99.75 397 WP_061189306.1 class C beta-lactamase PDC-114 NF000422.6 PDC family class C beta-lactamase
estrain@4 5 blaTEM-156 blaTEM-156 class A beta-lactamase TEM-156 core AMR AMR BETA-LACTAM BETA-LACTAM ALLELEP 286 286 100.00 100.00 286 WP_061158039.1 class A beta-lactamase TEM-156 NF000531.2 TEM family class A beta-lactamase
estrain@4 6 blaTEM-internal_stop blaTEM TEM family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALP 144 286 50.35 97.22 144 WP_000027057.1 class A broad-spectrum beta-lactamase TEM-1 NF000531.2 TEM family class A beta-lactamase
estrain@4 7 nimIJ_hmm nimIJ NimIJ family nitroimidazole resistance protein core AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE HMM 166 NA NA NA NA NA NA NF000262.1 NimIJ family nitroimidazole resistance protein
estrain@4 8 sul2_partial_3p_neg sul2 sulfonamide-resistant dihydropteroate synthase Sul2 core AMR AMR SULFONAMIDE SULFONAMIDE PARTIALP 221 271 81.55 100.00 221 WP_001043265.1 sulfonamide-resistant dihydropteroate synthase Sul2 NF000295.1 sulfonamide-resistant dihydropteroate synthase Sul2
estrain@4 9 vanG vanG D-alanine--D-serine ligase VanG core AMR AMR GLYCOPEPTIDE VANCOMYCIN EXACTP 349 349 100.00 100.00 349 WP_063856695.1 D-alanine--D-serine ligase VanG NF000091.3 D-alanine--D-serine ligase VanG