Mercurial > repos > estrain > ncbi_amrfinderplus

diff test-data/test_prot.expected @ 3:dddde93d5c20

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author estrain
date Fri, 06 Mar 2020 10:43:40 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_prot.expected	Fri Mar 06 10:43:40 2020 -0500
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+Protein identifier	Gene symbol	Sequence name	Scope	Element type	Element subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference sequence	% Identity to reference sequence	Alignment length	Accession of closest sequence	Name of closest sequence	HMM id	HMM description
+aph3pp-Ib_partial_5p_neg	aph(3'')-Ib	aminoglycoside O-phosphotransferase APH(3'')-Ib	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	PARTIALP	225	275	81.82	99.56	225	WP_109545041.1	aminoglycoside O-phosphotransferase APH(3'')-Ib	NF032895.1	aminoglycoside O-phosphotransferase APH(3'')-Ib
+blaOXA-436_partial	blaOXA	OXA-48 family class D beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	PARTIALP	233	265	87.92	100.00	233	WP_058842180.1	OXA-48 family carbapenem-hydrolyzing class D beta-lactamase OXA-436	NF000387.2	OXA-48 family class D beta-lactamase
+blaPDC-114_blast	blaPDC	PDC family class C beta-lactamase	core	AMR	AMR	BETA-LACTAM	CEPHALOSPORIN	BLASTP	397	397	100.00	99.75	397	WP_061189306.1	class C beta-lactamase PDC-114	NF000422.6	PDC family class C beta-lactamase
+blaTEM-156	blaTEM-156	class A beta-lactamase TEM-156	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	ALLELEP	286	286	100.00	100.00	286	WP_061158039.1	class A beta-lactamase TEM-156	NF000531.2	TEM family class A beta-lactamase
+blaTEM-internal_stop	blaTEM	TEM family class A beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	PARTIALP	144	286	50.35	97.22	144	WP_000027057.1	class A broad-spectrum beta-lactamase TEM-1	NF000531.2	TEM family class A beta-lactamase
+nimIJ_hmm	nimIJ	NimIJ family nitroimidazole resistance protein	core	AMR	AMR	NITROIMIDAZOLE	NITROIMIDAZOLE	HMM	166	NA	NA	NA	NA	NA	NA	NF000262.1	NimIJ family nitroimidazole resistance protein
+sul2_partial_3p_neg	sul2	sulfonamide-resistant dihydropteroate synthase Sul2	core	AMR	AMR	SULFONAMIDE	SULFONAMIDE	PARTIALP	221	271	81.55	100.00	221	WP_001043265.1	sulfonamide-resistant dihydropteroate synthase Sul2	NF000295.1	sulfonamide-resistant dihydropteroate synthase Sul2
+vanG	vanG	D-alanine--D-serine ligase VanG	core	AMR	AMR	GLYCOPEPTIDE	VANCOMYCIN	EXACTP	349	349	100.00	100.00	349	WP_063856695.1	D-alanine--D-serine ligase VanG	NF000091.3	D-alanine--D-serine ligase VanG