estrain@0: import os, sys
estrain@0: from distutils.core import setup
estrain@0: from setuptools import find_packages
estrain@0: 
estrain@0: def readme():
estrain@0:     with open('README.md') as f:
estrain@0:         return f.read()
estrain@0: 
estrain@0: setup(name='SeqSero2',
estrain@0:     version=open("version.py").readlines()[-1].split()[-1].strip("\"'"),
estrain@0:     description='Salmonella serotyping',
estrain@0:     long_description=readme(),
estrain@0:     classifiers=[
estrain@0:         'Development Status :: 3 - Alpha',
estrain@0:         'License :: OSI Approved :: GNU General Public License v2 (GPLv2)',
estrain@0:         'Programming Language :: Python :: 3',
estrain@0:         'Topic :: Text Processing :: Linguistic',
estrain@0:         ],
estrain@0:     keywords='Salmonella serotyping bioinformatics WGS',
estrain@0:     url='https://github.com/denglab/SeqSero2/',
estrain@0:     author='Shaokang Zhang, Hendrik C Den-Bakker and Xiangyu Deng',
estrain@0:     author_email='zskzsk@uga.edu, Hendrik.DenBakker@uga.edu, xdeng@uga.edu',
estrain@0:     license='GPLv2',
estrain@0:     scripts=["bin/deinterleave_fastq.sh","bin/Initial_Conditions.py","bin/SeqSero2_package.py","bin/SeqSero2_update_kmer_database.py"],
estrain@0:     packages=[""],
estrain@0:     include_package_data = True,
estrain@0:     install_requires=['biopython==1.73'],
estrain@0:     data_files=[("seqsero2_db",["seqsero2_db/antigens.pickle","seqsero2_db/H_and_O_and_specific_genes.fasta","seqsero2_db/invA_mers_dict","seqsero2_db/special.pickle"])],
estrain@0:     zip_safe=False,
estrain@0: )