Mercurial > repos > estrain > seqsero2_v1_0_1

comparison seqsero2.xml @ 30:67621118a465

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author estrain
date Sat, 07 Sep 2019 14:27:25 -0400
parents 4a709def2980
children 6d8f3c66a836
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29:ea009bd561cd 30:67621118a465
13 <command detect_errors="exit_code"><![CDATA[ 13 <command detect_errors="exit_code"><![CDATA[
14 echo "SeqSero 2 v. 1.0.1" ; 14 echo "SeqSero 2 v. 1.0.1" ;
15 mkdir ./output; 15 mkdir ./output;
16 cp $__tool_directory__/SalmID.py output/; 16 cp $__tool_directory__/SalmID.py output/;
17 cp $__tool_directory__/invA_mers_dict output/; 17 cp $__tool_directory__/invA_mers_dict output/;
18 cp $__tool_directory__/rpoB_mers.dict output/; 18 cp $__tool_directory__/rpoB_mers_dict output/;
19 19
20 #if $reads.reads_select == 'history' 20 #if $reads.reads_select == 'history'
21 #set $name = $reads.forward.name.split('.')[0].replace(' ','_') 21 #set $name = $reads.forward.name.split('.')[0].replace(' ','_')
22 #set $forward = $reads.forward 22 #set $forward = $reads.forward
23 #set $reverse = $reads.reverse 23 #set $reverse = $reads.reverse