Mercurial > repos > estrain > seqsero2_v1_0_1

comparison SalmID.py @ 17:9438261e43e0

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Uploaded
author estrain
date Sat, 07 Sep 2019 13:04:13 -0400
parents 6d28f83c35b1
children f918518b7d7b
comparison
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16:81fce62ea8c1 17:9438261e43e0
264 else: 264 else:
265 return rpoB, invA, (average_read_length * number_of_reads) / 5000000 265 return rpoB, invA, (average_read_length * number_of_reads) / 5000000
266 266
267 267
268 def main(): 268 def main():
269 ex_dir = os.path.abspath(os.path.dirname(os.path.realpath(__file__))) 269 #ex_dir = os.path.abspath(os.path.dirname(os.path.realpath(__file__)))
270 #ex_dir = os.path.dirname(os.path.realpath(__file__)) 270 ex_dir = os.path.dirname(os.path.realpath(__file__))
271 args = parse_args() 271 args = parse_args()
272 input_file = args.input_file 272 input_file = args.input_file
273 if input_file != 'None': 273 if input_file != 'None':
274 files = [input_file] 274 files = [input_file]
275 else: 275 else: