Mercurial > repos > estrain > seqsero2_v1_0_1

comparison seqsero2.xml @ 12:b43b7ef0df6a

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author estrain
date Sat, 07 Sep 2019 08:19:53 -0400
parents ff045f9e18f2
children b2b1d018b90d
comparison
equal deleted inserted replaced
11:ff045f9e18f2 12:b43b7ef0df6a
1 <tool id="seqsero2_v1_0_1" name="SeqSero 2" version="1.0.1"> 1 <tool id="seqsero2_v1_0_1" name="SeqSero 2" version="1.0.1">
2 <description>Salmonella serotype prediction</description> 2 <description>Salmonella serotype prediction</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3.6">python</requirement> 4 <requirement type="package" version="3.6">python</requirement>
5 <requirement type="package" version="1.73">biopython</requirement> 5 <requirement type="package" version="1.74">biopython</requirement>
6 <requirement type="package" version="2.7.1">blast</requirement> 6 <requirement type="package" version="2.7.1">blast</requirement>
7 <requirement type="package" version="1.9">samtools</requirement> 7 <requirement type="package" version="1.9">samtools</requirement>
8 <requirement type="package" version="2.9.1">sra-tools</requirement> 8 <requirement type="package" version="2.9.1">sra-tools</requirement>
9 <requirement type="package" version="0.7.17">bwa</requirement> 9 <requirement type="package" version="0.7.17">bwa</requirement>
10 <requirement type="package" version="3.13.1">spades</requirement> 10 <requirement type="package" version="3.13.1">spades</requirement>
86 86
87 87
88 88
89 </inputs> 89 </inputs>
90 <outputs> 90 <outputs>
91 <data format="tabular" label="SeqSero Results" name="results" from_work_dir="output/Seqsero_result.txt"/> 91 <data format="tabular" label="SeqSero Results" name="results" from_work_dir="output/SeqSero_result.txt"/>
92 </outputs> 92 </outputs>
93 <tests> 93 <tests>
94 <!-- <test> 94 <!-- <test>
95 <param name="reads_select" value="history" /> 95 <param name="reads_select" value="history" />
96 <param name="forward" value="forward.fastq.gz" ftype="fastqsanger.gz" /> 96 <param name="forward" value="forward.fastq.gz" ftype="fastqsanger.gz" />