# HG changeset patch
# User estrain
# Date 1567880460 14400
# Node ID 8d7b59db3aa1825558fdc411a6f7f672ebd46d1e
# Parent  4a709def29806b005c44fa7fd6daa5f12b2605c4
Uploaded

diff -r 4a709def2980 -r 8d7b59db3aa1 SeqSero2_package.py
--- a/SeqSero2_package.py	Sat Sep 07 14:20:44 2019 -0400
+++ b/SeqSero2_package.py	Sat Sep 07 14:21:00 2019 -0400
@@ -1214,7 +1214,7 @@
 
 def judge_subspecies(fnameA,dirpath):
   #seqsero2 -a; judge subspecies on just forward raw reads fastq
-  salmID_output=subprocess.Popen("./SalmID.py -i "+fnameA,shell=True,stdout=subprocess.PIPE,stderr=subprocess.PIPE)
+  salmID_output=subprocess.Popen("SalmID.py -i "+fnameA,shell=True,stdout=subprocess.PIPE,stderr=subprocess.PIPE)
   salmID_output2=subprocess.Popen("ls ..",shell=True,stdout=subprocess.PIPE,stderr=subprocess.PIPE)
   out, err = salmID_output.communicate()
   out2, err2 = salmID_output2.communicate()