Mercurial > repos > estrain > spades_cpu7mem28
view write_tsv_script.py @ 1:45b5f747c900 draft default tip
planemo upload commit 611f051119d03ed04af67a33e403496bc3e7cc1e
| author | galaxytrakr |
|---|---|
| date | Thu, 19 Mar 2026 15:43:04 +0000 |
| parents | f69397b32f52 |
| children |
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#!/usr/bin/env python import re import sys search_str = r"^>(NODE|\S+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*)(.*\$)?" replace_str = r"\1_\2\t\3\t\4" cmd = re.compile(search_str) sys.stdout.write("#name\tlength\tcoverage\n") for i, line in enumerate(sys.stdin): if cmd.match(line): sys.stdout.write(cmd.sub(replace_str, line))
