Mercurial > repos > galaxytrakr > aws_sra

comparison aws_sra.xml @ 5:313a1e088e09 draft

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planemo upload for repository https://github.com/CFSAN-Biostatistics/galaxytrakr-tools commit f79fae538cabdbb93082069dc04d9f203500a481
author galaxytrakr
date Mon, 23 Mar 2026 15:52:57 +0000
parents 0e6eba56289f
children 8c60cd4c0ca7
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4:0e6eba56289f 5:313a1e088e09
1 <tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.3.0+gt_0.4" profile="23.0"> 1 <tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.3.0+gt_0.5" profile="23.0">
2 <description>Fetch SRA data files from NCBI's public AWS S3 buckets</description> 2 <description>Fetch SRA data files from NCBI's public AWS S3 buckets</description>
3 3
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.34.8">awscli</requirement> 5 <requirement type="package" version="2.34.8">awscli</requirement>
6 <requirement type="package" version="3.2.1">sra-tools</requirement> 6 <requirement type="package" version="3.2.1">sra-tools</requirement>
7 <requirement type="package" version="2.8">pigz</requirement> 7 <requirement type="package" version="2.8">pigz</requirement>
8 </requirements> 8 </requirements>
9
10 9
11 <version_command>aws --version</version_command> 10 <version_command>aws --version</version_command>
12 11
13 <command detect_errors="exit_code"><![CDATA[ 12 <command detect_errors="exit_code"><![CDATA[
14 ## ── Resolve bucket base URL ────────────────────────────────────────────── 13 ## ── Resolve bucket base URL ──────────────────────────────────────────────