Mercurial > repos > galaxytrakr > aws_sra

comparison aws_sra.xml @ 24:7dbb60c48056 draft

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planemo upload for repository https://github.com/CFSAN-Biostatistics/galaxytrakr-tools commit 29ed254c4aaab320b5482db410bd236d00f1b70e
author galaxytrakr
date Tue, 24 Mar 2026 00:16:16 +0000
parents d7f68b3cde39
children 29a9d9215f0e
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23:d7f68b3cde39 24:7dbb60c48056
1 <tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.4.0+gt+0.2" profile="23.0"> 1 <tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.4.0+gt+0.3" profile="23.0">
2 <description>Fetches one or more SRA runs from AWS S3 and converts them to FASTQ</description> 2 <description>Fetches one or more SRA runs from AWS S3 and converts them to FASTQ</description>
3 3
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.34.8">awscli</requirement> 5 <requirement type="package" version="2.34.8">awscli</requirement>
6 <requirement type="package" version="3.2.1">sra-tools</requirement> 6 <requirement type="package" version="3.2.1">sra-tools</requirement>
64 <tests> 64 <tests>
65 <test expect_num_outputs="2"> 65 <test expect_num_outputs="2">
66 <param name="accession" value="SRR13333333"/> 66 <param name="accession" value="SRR13333333"/>
67 <param name="layout" value="paired"/> 67 <param name="layout" value="paired"/>
68 <output_collection name="output_r1" type="list" count="1"> 68 <output_collection name="output_r1" type="list" count="1">
69 <element name="SRR13333333_1" ftype="fastqsanger.gz" has_text="@SRR13333333"/> 69 <element name="SRR13333333_1" ftype="fastqsanger.gz">
70 <assert_contents>
71 <has_text text="@SRR13333333"/>
72 </assert_contents>
73 </element>
70 </output_collection> 74 </output_collection>
71 <output_collection name="output_r2" type="list" count="1"> 75 <output_collection name="output_r2" type="list" count="1">
72 <element name="SRR13333333_2" ftype="fastqsanger.gz" has_text="@SRR13333333"/> 76 <element name="SRR13333333_2" ftype="fastqsanger.gz">
77 <assert_contents>
78 <has_text text="@SRR13333333"/>
79 </assert_contents>
80 </element>
73 </output_collection> 81 </output_collection>
74 </test> 82 </test>
75 </tests> 83 </tests>
76 84
77 <help><![CDATA[ 85 <help><![CDATA[