Mercurial > repos > galaxytrakr > aws_sra

comparison aws_sra.xml @ 38:980bb8758ff4 draft

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planemo upload for repository https://github.com/CFSAN-Biostatistics/galaxytrakr-tools commit c7b4151bd24d6de338ef96917c451f4b65bf399f
author galaxytrakr
date Wed, 25 Mar 2026 01:50:22 +0000
parents cf03db9460f8
children bb993ca44098
comparison
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37:cf03db9460f8 38:980bb8758ff4
1 <tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.4.0+gt_1.6" profile="23.0"> 1 <tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.4.0+gt_1.7" profile="23.0">
2 <description>Fetches one or more SRA runs from AWS S3 and converts them to FASTQ</description> 2 <description>Fetches one or more SRA runs from AWS S3 and converts them to FASTQ</description>
3 3
4 <requirements> 4 <requirements>
5 <requirement type="package" version="3.1.1">sra-tools</requirement> 5 <requirement type="package" version="3.1.1">sra-tools</requirement>
6 <requirement type="package" version="2.8">pigz</requirement> 6 <requirement type="package" version="2.8">pigz</requirement>
92 </collection> 92 </collection>
93 <collection name="output_other" type="list" label="Other FASTQ (aws_sra)"> 93 <collection name="output_other" type="list" label="Other FASTQ (aws_sra)">
94 <discover_datasets 94 <discover_datasets
95 pattern="(?P&lt;designation&gt;.+)\.fastqsanger\.gz" 95 pattern="(?P&lt;designation&gt;.+)\.fastqsanger\.gz"
96 directory="outputOther" 96 directory="outputOther"
97 format="fastqsanger.gz"/> 97 ext="fastqsanger.gz"/>
98 </collection> 98 </collection>
99 </outputs> 99 </outputs>
100 100
101 <tests> 101 <tests>
102 <test expect_num_outputs="3"> 102 <test expect_num_outputs="3">