Mercurial > repos > galaxytrakr > aws_sra

diff aws_sra.xml @ 34:4c1ff0d60937 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/CFSAN-Biostatistics/galaxytrakr-tools commit 20ff195077e9908aaf309f1588475edf3d6291ee
author galaxytrakr
date Tue, 24 Mar 2026 14:41:33 +0000
parents 4dbb8753a569
children b67fb757d585
line wrap: on
line diff
--- a/aws_sra.xml	Tue Mar 24 14:28:21 2026 +0000
+++ b/aws_sra.xml	Tue Mar 24 14:41:33 2026 +0000
@@ -1,4 +1,4 @@
-<tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.4.0+gt_1.2" profile="23.0">
+<tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.4.0+gt_1.3" profile="23.0">
     <description>Fetches one or more SRA runs from AWS S3 and converts them to FASTQ</description>
 
     <requirements>
@@ -80,7 +80,7 @@
     <outputs>
         <collection name="list_paired" type="list:paired" label="Paired-end FASTQ (aws_sra)">
             <discover_datasets
-                pattern="(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\\.fastqsanger\\.gz"
+                pattern="(?P&lt;designation&gt;.+)_(?P&lt;pair_identifier&gt;[12])\\.fastqsanger\\.gz"
                 directory="output"
                 ext="fastqsanger.gz"/>
         </collection>