Mercurial > repos > galaxytrakr > aws_sra

diff aws_sra.xml @ 35:b67fb757d585 draft

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planemo upload for repository https://github.com/CFSAN-Biostatistics/galaxytrakr-tools commit c3ad6628d856e66db87f4ad2f21484f4b759544a
author galaxytrakr
date Tue, 24 Mar 2026 14:56:17 +0000
parents 4c1ff0d60937
children 4632b9e5e884
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--- a/aws_sra.xml	Tue Mar 24 14:41:33 2026 +0000
+++ b/aws_sra.xml	Tue Mar 24 14:56:17 2026 +0000
@@ -1,4 +1,4 @@
-<tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.4.0+gt_1.3" profile="23.0">
+<tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.4.0+gt_1.4" profile="23.0">
     <description>Fetches one or more SRA runs from AWS S3 and converts them to FASTQ</description>
 
     <requirements>
@@ -80,7 +80,7 @@
     <outputs>
         <collection name="list_paired" type="list:paired" label="Paired-end FASTQ (aws_sra)">
             <discover_datasets
-                pattern="(?P&lt;designation&gt;.+)_(?P&lt;pair_identifier&gt;[12])\\.fastqsanger\\.gz"
+                pattern="(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\.fastqsanger.gz" 
                 directory="output"
                 ext="fastqsanger.gz"/>
         </collection>