# HG changeset patch
# User galaxytrakr
# Date 1774436545 0
# Node ID 04632fbfb7525e732ebfea0aaf5959357f75808f
# Parent  bb993ca440981fc3a14115c4a58f7031827f632d
planemo upload for repository https://github.com/CFSAN-Biostatistics/galaxytrakr-tools commit ae8bd99f91b8f4bbf9a020c7a641425a2931106a

diff -r bb993ca44098 -r 04632fbfb752 aws_sra.xml
--- a/aws_sra.xml	Wed Mar 25 10:35:36 2026 +0000
+++ b/aws_sra.xml	Wed Mar 25 11:02:25 2026 +0000
@@ -1,4 +1,4 @@
-<tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.4.0+gt_1.8" profile="23.0">
+<tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.4.0+gt_1.9" profile="23.0">
     <description>Fetches one or more SRA runs from AWS S3 and converts them to FASTQ</description>
 
     <requirements>
@@ -29,7 +29,7 @@
         echo "Found \$count fastq file(s) for \$acc" &&
         data=(\$(ls \${acc}*.fastq 2>/dev/null)) &&
         if [ "\$count" -eq 1 ]; then
-            pigz -cqp \${GALAXY_SLOTS:-4} "\${data[0]}" > outputSingle/"\${acc}__single.fastqsanger.gz &&
+            pigz -cqp \${GALAXY_SLOTS:-4} "\${data[0]}" > outputSingle/"\${acc}"__single.fastqsanger.gz &&
             rm "\${data[0]}";
         elif [ "\$count" -eq 2 ]; then
             pigz -cqp \${GALAXY_SLOTS:-4} "\${acc}"_1.fastq > output/"\${acc}"_forward.fastqsanger.gz &&