# HG changeset patch
# User galaxytrakr
# Date 1774297113 0
# Node ID 25cf81d65cb8f39eeb163a3c3e4c33df6be7cbdb
# Parent  27569ff426e0afaeaa4f7cc411d6596b940450b8
planemo upload for repository https://github.com/CFSAN-Biostatistics/galaxytrakr-tools commit fd740a9434d21f68658fe261b1b043033e491b05

diff -r 27569ff426e0 -r 25cf81d65cb8 aws_sra.xml
--- a/aws_sra.xml	Mon Mar 23 20:09:31 2026 +0000
+++ b/aws_sra.xml	Mon Mar 23 20:18:33 2026 +0000
@@ -1,4 +1,4 @@
-<tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.3.0+gt_0.14" profile="23.0">
+<tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.3.0+gt_0.15" profile="23.0">
     <description>Fetches SRA runs from AWS and converts them to FASTQ</description>
 
     <requirements>
@@ -69,10 +69,10 @@
     <outputs>
         <!-- These collections will gather all the files produced by the loop -->
         <collection name="output_r1" type="list" label="${run_type.accession or 'FASTQ Reads (R1)'}">
-            <discover_datasets pattern="(?P<designation>.+)_1\.fastq\.gz" format="fastqsanger.gz" />
+            <discover_datasets pattern="(?P&lt;designation&gt;.+)_1\.fastq\.gz" format="fastqsanger.gz" />
         </collection>
         <collection name="output_r2" type="list" label="${run_type.accession or 'FASTQ Reads (R2)'}">
-            <discover_datasets pattern="(?P<designation>.+)_2\.fastq\.gz" format="fastqsanger.gz" />
+            <discover_datasets pattern="(?P&lt;designation&gt;.+)_2\.fastq\.gz" format="fastqsanger.gz" />
             <filter>layout == 'paired'</filter>
         </collection>
     </outputs>