# HG changeset patch
# User galaxytrakr
# Date 1774362501 0
# Node ID 4dbb8753a56959933c2e84250caea981a14a4eeb
# Parent  8b8a637868535fcddd116a3cd322e11ae9dd960f
planemo upload for repository https://github.com/CFSAN-Biostatistics/galaxytrakr-tools commit 569b20847bf87de3c298edf3d2435d198b8805ba

diff -r 8b8a63786853 -r 4dbb8753a569 aws_sra.xml
--- a/aws_sra.xml	Tue Mar 24 14:12:59 2026 +0000
+++ b/aws_sra.xml	Tue Mar 24 14:28:21 2026 +0000
@@ -1,4 +1,4 @@
-<tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.4.0+gt_1.1" profile="23.0">
+<tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.4.0+gt_1.2" profile="23.0">
     <description>Fetches one or more SRA runs from AWS S3 and converts them to FASTQ</description>
 
     <requirements>
@@ -80,13 +80,13 @@
     <outputs>
         <collection name="list_paired" type="list:paired" label="Paired-end FASTQ (aws_sra)">
             <discover_datasets
-                pattern="(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[12])\.fastqsanger\.gz"
+                pattern="(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\\.fastqsanger\\.gz"
                 directory="output"
                 ext="fastqsanger.gz"/>
         </collection>
         <collection name="output_single" type="list" label="Single-end FASTQ (aws_sra)">
             <discover_datasets
-                pattern="(?P&lt;designation&gt;.+?)(?&lt;!_[12])\\.fastqsanger\\.gz"
+                pattern="(?P&lt;designation&gt;.+)\\.fastqsanger\\.gz"
                 directory="outputSingle"
                 ext="fastqsanger.gz"/>
         </collection>