Mercurial > repos > galaxytrakr > aws_sra

changeset 16:58cc45662c63 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/CFSAN-Biostatistics/galaxytrakr-tools commit 98b1c300d492ffb675d64e6c64484c681b277369
author galaxytrakr
date Mon, 23 Mar 2026 20:23:58 +0000
parents 25cf81d65cb8
children 9fb80e0392ce
files aws_sra.xml
diffstat 1 files changed, 11 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/aws_sra.xml	Mon Mar 23 20:18:33 2026 +0000
+++ b/aws_sra.xml	Mon Mar 23 20:23:58 2026 +0000
@@ -1,4 +1,4 @@
-<tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.3.0+gt_0.15" profile="23.0">
+<tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.3.0+gt_0.16" profile="23.0">
     <description>Fetches SRA runs from AWS and converts them to FASTQ</description>
 
     <requirements>
@@ -83,10 +83,18 @@
             <param name="accession" value="SRR13333333"/>
             <param name="layout" value="paired"/>
             <output_collection name="output_r1" type="list" count="1">
-                <element name="SRR13333333_1" ftype="fastqsanger.gz" has_text="@SRR13333333"/>
+                <element name="SRR13333333_1" ftype="fastqsanger.gz">
+                    <assert_contents>
+                        <has_text text="@SRR13333333"/>
+                    </assert_contents>
+            </element>
             </output_collection>
             <output_collection name="output_r2" type="list" count="1">
-                <element name="SRR13333333_2" ftype="fastqsanger.gz" has_text="@SRR13333333"/>
+                <element name="SRR13333333_2" ftype="fastqsanger.gz">
+                    <assert_contents>
+                        <has_text text="@SRR13333333"/>
+                    </assert_contents>
+                </element>
             </output_collection>
         </test>
     </tests>