Mercurial > repos > galaxytrakr > aws_sra

changeset 24:7dbb60c48056 draft

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planemo upload for repository https://github.com/CFSAN-Biostatistics/galaxytrakr-tools commit 29ed254c4aaab320b5482db410bd236d00f1b70e
author galaxytrakr
date Tue, 24 Mar 2026 00:16:16 +0000
parents d7f68b3cde39
children 29a9d9215f0e
files aws_sra.xml
diffstat 1 files changed, 11 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/aws_sra.xml	Mon Mar 23 23:55:36 2026 +0000
+++ b/aws_sra.xml	Tue Mar 24 00:16:16 2026 +0000
@@ -1,4 +1,4 @@
-<tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.4.0+gt+0.2" profile="23.0">
+<tool id="aws_sra" name="NCBI SRA AWS Fetch" version="0.4.0+gt+0.3" profile="23.0">
     <description>Fetches one or more SRA runs from AWS S3 and converts them to FASTQ</description>
 
     <requirements>
@@ -66,10 +66,18 @@
             <param name="accession" value="SRR13333333"/>
             <param name="layout" value="paired"/>
             <output_collection name="output_r1" type="list" count="1">
-                <element name="SRR13333333_1" ftype="fastqsanger.gz" has_text="@SRR13333333"/>
+                <element name="SRR13333333_1" ftype="fastqsanger.gz">
+                    <assert_contents>
+                        <has_text text="@SRR13333333"/>
+                    </assert_contents>
+                </element>
             </output_collection>
             <output_collection name="output_r2" type="list" count="1">
-                <element name="SRR13333333_2" ftype="fastqsanger.gz" has_text="@SRR13333333"/>
+                <element name="SRR13333333_2" ftype="fastqsanger.gz">
+                    <assert_contents>
+                        <has_text text="@SRR13333333"/>
+                    </assert_contents>
+                </element>
             </output_collection>
         </test>
     </tests>