Mercurial > repos > galaxytrakr > cfsan2snp2

annotate tool-data/all_fasta.loc.sample @ 10:ec50b4ed004c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 73945687c1471741694cf99bbcdb8465ab5110f6
author galaxytrakr
date Thu, 19 Mar 2026 13:32:08 +0000
parents 8e7a84e62b43
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
8e7a84e62b43 planemo upload commit e734452c606dba89b6fe58c90c5f38e5ea067edd
galaxytrakr
parents:
diff changeset
1 #This file lists the locations and dbkeys of all the fasta files
8e7a84e62b43 planemo upload commit e734452c606dba89b6fe58c90c5f38e5ea067edd
galaxytrakr
parents:
diff changeset
2 #under the "genome" directory (a directory that contains a directory
8e7a84e62b43 planemo upload commit e734452c606dba89b6fe58c90c5f38e5ea067edd
galaxytrakr
parents:
diff changeset
3 #for each build). The script extract_fasta.py will generate the file
8e7a84e62b43 planemo upload commit e734452c606dba89b6fe58c90c5f38e5ea067edd
galaxytrakr
parents:
diff changeset
4 #all_fasta.loc. This file has the format (white space characters are
8e7a84e62b43 planemo upload commit e734452c606dba89b6fe58c90c5f38e5ea067edd
galaxytrakr
parents:
diff changeset
5 #TAB characters):
8e7a84e62b43 planemo upload commit e734452c606dba89b6fe58c90c5f38e5ea067edd
galaxytrakr
parents:
diff changeset
6 #
8e7a84e62b43 planemo upload commit e734452c606dba89b6fe58c90c5f38e5ea067edd
galaxytrakr
parents:
diff changeset
7 #<unique_build_id> <dbkey> <display_name> <file_path>
8e7a84e62b43 planemo upload commit e734452c606dba89b6fe58c90c5f38e5ea067edd
galaxytrakr
parents:
diff changeset
8 #
8e7a84e62b43 planemo upload commit e734452c606dba89b6fe58c90c5f38e5ea067edd
galaxytrakr
parents:
diff changeset
9 #So, all_fasta.loc could look something like this:
8e7a84e62b43 planemo upload commit e734452c606dba89b6fe58c90c5f38e5ea067edd
galaxytrakr
parents:
diff changeset
10 #test1 test1 Test-Genome ./test-data/test1.fa