Mercurial > repos > galaxytrakr > cfsan2snp2

comparison Dockerfile @ 9:0bf7e9b50206 draft

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planemo upload commit 08766844be8ff134960253aeb81bd6c6ae0a4dcc
author galaxytrakr
date Thu, 19 Mar 2026 13:22:33 +0000
parents 30b679ab4600
children ec50b4ed004c
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8:f63e409bdc49 9:0bf7e9b50206
38 # Core Python packages 38 # Core Python packages
39 RUN pip install --no-cache-dir -U \ 39 RUN pip install --no-cache-dir -U \
40 pandas~=1.2.0 pybedtools refchooser scikit-learn 40 pandas~=1.2.0 pybedtools refchooser scikit-learn
41 41
42 # ---- Fetch sources/artifacts ---- 42 # ---- Fetch sources/artifacts ----
43
43 # bedtools 44 # bedtools
44 ADD https://github.com/arq5x/bedtools2/archive/refs/tags/v${BEDTOOLS_VER}.tar.gz . 45 ADD https://github.com/arq5x/bedtools2/archive/refs/tags/v${BEDTOOLS_VER}.tar.gz .
45 # mummer 46 # mummer
46 ADD https://github.com/mummer4/mummer/releases/download/v${MUMMER_VER}rc1/mummer-${MUMMER_VER}rc1.tar.gz . 47 ADD https://github.com/mummer4/mummer/releases/download/v${MUMMER_VER}rc1/mummer-${MUMMER_VER}rc1.tar.gz .
47 # skesa prebuilt bins 48 # skesa prebuilt bins