Mercurial > repos > galaxytrakr > cfsan2snp2

comparison Dockerfile @ 7:30b679ab4600 draft

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planemo upload commit d2b65017e79e038d2e9174fe9fe1d03fd4fde673
author galaxytrakr
date Sat, 14 Mar 2026 01:56:17 +0000
parents 525d9e59cd6a
children 0bf7e9b50206
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6:96baf2d79869 7:30b679ab4600
53 # iqtree2 53 # iqtree2
54 ADD https://github.com/Cibiv/IQ-TREE/releases/download/v${IQTREE_VER}/iqtree-${IQTREE_VER}-Linux.tar.gz . 54 ADD https://github.com/Cibiv/IQ-TREE/releases/download/v${IQTREE_VER}/iqtree-${IQTREE_VER}-Linux.tar.gz .
55 55
56 # ---- Build/install tools into /usr/local ---- 56 # ---- Build/install tools into /usr/local ----
57 # bedtools 57 # bedtools
58
59 RUN tar -xzf v${BEDTOOLS_VER}.tar.gz && rm v${BEDTOOLS_VER}.tar.gz && \ 58 RUN tar -xzf v${BEDTOOLS_VER}.tar.gz && rm v${BEDTOOLS_VER}.tar.gz && \
60 cd bedtools2-${BEDTOOLS_VER} && make -j && make install 59 cd bedtools2-${BEDTOOLS_VER} && make -j && make install
61 60
62 # Install MUMmer and copy Perl modules where dnadiff expects them 61 # Install MUMmer and copy Perl modules where dnadiff expects them
63 RUN tar -xvf mummer-${MUMMER_VER}rc1.tar.gz && rm mummer-${MUMMER_VER}rc1.tar.gz && \ 62 RUN tar -xvf mummer-${MUMMER_VER}rc1.tar.gz && rm mummer-${MUMMER_VER}rc1.tar.gz && \