Mercurial > repos > galaxytrakr > cfsan2snp2

comparison Dockerfile @ 3:41947f5498b4 draft

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planemo upload commit 873cdb55e8966036a3b06bc8c83a3c8ec6ac4d56
author galaxytrakr
date Sat, 14 Mar 2026 00:17:27 +0000
parents dcd06ca636af
children 525d9e59cd6a
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2:dcd06ca636af 3:41947f5498b4
52 ADD https://github.com/marbl/Mash/releases/download/v${MASH_VER}/mash-Linux64-v${MASH_VER}.tar . 52 ADD https://github.com/marbl/Mash/releases/download/v${MASH_VER}/mash-Linux64-v${MASH_VER}.tar .
53 # iqtree2 53 # iqtree2
54 ADD https://github.com/Cibiv/IQ-TREE/releases/download/v${IQTREE_VER}/iqtree-${IQTREE_VER}-Linux.tar.gz . 54 ADD https://github.com/Cibiv/IQ-TREE/releases/download/v${IQTREE_VER}/iqtree-${IQTREE_VER}-Linux.tar.gz .
55 55
56 # ---- Build/install tools into /usr/local ---- 56 # ---- Build/install tools into /usr/local ----
57
58 # bedtools 57 # bedtools
59 RUN tar -xzf v${BEDTOOLS_VER}.tar.gz && rm v${BEDTOOLS_VER}.tar.gz && \ 58 RUN tar -xzf v${BEDTOOLS_VER}.tar.gz && rm v${BEDTOOLS_VER}.tar.gz && \
60 cd bedtools2-${BEDTOOLS_VER} && make -j && make install 59 cd bedtools2-${BEDTOOLS_VER} && make -j && make install
61 60
62 # Install MUMmer and copy Perl modules where dnadiff expects them 61 # Install MUMmer and copy Perl modules where dnadiff expects them