Mercurial > repos > galaxytrakr > cfsan2snp2

comparison Dockerfile @ 13:523c01a7cbe6 draft

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planemo upload commit b92428d8141ae92d47939ee4ed82a185401d63b9
author galaxytrakr
date Thu, 19 Mar 2026 14:44:21 +0000
parents 069a312638d0
children 81f96bc5a2a8
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12:069a312638d0 13:523c01a7cbe6
38 # Core Python packages 38 # Core Python packages
39 RUN pip install --no-cache-dir -U \ 39 RUN pip install --no-cache-dir -U \
40 pandas~=1.2.0 pybedtools refchooser scikit-learn 40 pandas~=1.2.0 pybedtools refchooser scikit-learn
41 41
42 # ---- Fetch sources/artifacts ---- 42 # ---- Fetch sources/artifacts ----
43
43 # bedtools 44 # bedtools
44 ADD https://github.com/arq5x/bedtools2/archive/refs/tags/v${BEDTOOLS_VER}.tar.gz . 45 ADD https://github.com/arq5x/bedtools2/archive/refs/tags/v${BEDTOOLS_VER}.tar.gz .
45 # mummer 46 # mummer
46 ADD https://github.com/mummer4/mummer/releases/download/v${MUMMER_VER}rc1/mummer-${MUMMER_VER}rc1.tar.gz . 47 ADD https://github.com/mummer4/mummer/releases/download/v${MUMMER_VER}rc1/mummer-${MUMMER_VER}rc1.tar.gz .
47 # skesa prebuilt bins 48 # skesa prebuilt bins