Mercurial > repos > galaxytrakr > cfsan2snp2

comparison Dockerfile @ 5:525d9e59cd6a draft

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planemo upload commit 6f6cee1f2089989317b98440395c14e3fee9b2a1
author galaxytrakr
date Sat, 14 Mar 2026 00:59:12 +0000
parents 41947f5498b4
children 30b679ab4600
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4:e1bd0272cc59 5:525d9e59cd6a
53 # iqtree2 53 # iqtree2
54 ADD https://github.com/Cibiv/IQ-TREE/releases/download/v${IQTREE_VER}/iqtree-${IQTREE_VER}-Linux.tar.gz . 54 ADD https://github.com/Cibiv/IQ-TREE/releases/download/v${IQTREE_VER}/iqtree-${IQTREE_VER}-Linux.tar.gz .
55 55
56 # ---- Build/install tools into /usr/local ---- 56 # ---- Build/install tools into /usr/local ----
57 # bedtools 57 # bedtools
58
58 RUN tar -xzf v${BEDTOOLS_VER}.tar.gz && rm v${BEDTOOLS_VER}.tar.gz && \ 59 RUN tar -xzf v${BEDTOOLS_VER}.tar.gz && rm v${BEDTOOLS_VER}.tar.gz && \
59 cd bedtools2-${BEDTOOLS_VER} && make -j && make install 60 cd bedtools2-${BEDTOOLS_VER} && make -j && make install
60 61
61 # Install MUMmer and copy Perl modules where dnadiff expects them 62 # Install MUMmer and copy Perl modules where dnadiff expects them
62 RUN tar -xvf mummer-${MUMMER_VER}rc1.tar.gz && rm mummer-${MUMMER_VER}rc1.tar.gz && \ 63 RUN tar -xvf mummer-${MUMMER_VER}rc1.tar.gz && rm mummer-${MUMMER_VER}rc1.tar.gz && \