Mercurial > repos > galaxytrakr > cfsan2snp2

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planemo upload commit 2a16aa1a872336561378f55b9b3ecd74dcfcfcbc
author galaxytrakr
date Thu, 19 Mar 2026 15:32:21 +0000
parents 523c01a7cbe6
children
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13:523c01a7cbe6 14:81f96bc5a2a8
38 # Core Python packages 38 # Core Python packages
39 RUN pip install --no-cache-dir -U \ 39 RUN pip install --no-cache-dir -U \
40 pandas~=1.2.0 pybedtools refchooser scikit-learn 40 pandas~=1.2.0 pybedtools refchooser scikit-learn
41 41
42 # ---- Fetch sources/artifacts ---- 42 # ---- Fetch sources/artifacts ----
43
44 # bedtools 43 # bedtools
45 ADD https://github.com/arq5x/bedtools2/archive/refs/tags/v${BEDTOOLS_VER}.tar.gz . 44 ADD https://github.com/arq5x/bedtools2/archive/refs/tags/v${BEDTOOLS_VER}.tar.gz .
46 # mummer 45 # mummer
47 ADD https://github.com/mummer4/mummer/releases/download/v${MUMMER_VER}rc1/mummer-${MUMMER_VER}rc1.tar.gz . 46 ADD https://github.com/mummer4/mummer/releases/download/v${MUMMER_VER}rc1/mummer-${MUMMER_VER}rc1.tar.gz .
48 # skesa prebuilt bins 47 # skesa prebuilt bins