Mercurial > repos > galaxytrakr > cfsan2snp2

comparison cfsan2snp-snp.xml @ 6:96baf2d79869 draft

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planemo upload commit 555cb5c147a42e8a049da148f111d53deda174fa
author galaxytrakr
date Sat, 14 Mar 2026 01:05:29 +0000
parents e1bd0272cc59
children 30b679ab4600
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5:525d9e59cd6a 6:96baf2d79869
1 <tool id="cfsan2snp-snp" name="CSP2 (SNP Pipeline Mode)" version="0.9.7.7+gt_0.7"> 1 <tool id="cfsan2snp-snp" name="CSP2 (SNP Pipeline Mode)" version="0.9.7.7+gt_0.7">
2 <description>Run SNP Pipeline analysis on isolates using one or more references.</description> 2 <description>Run SNP Pipeline analysis on isolates using one or more references.</description>
3 <requirements> 3 <requirements>
4 <container type="docker">quay.io/galaxytrakr/cfsan2snp2:873cdb5</container> 4 <container type="docker">quay.io/galaxytrakr/cfsan2snp2:6f6cee1</container>
5 </requirements> 5 </requirements>
6 <version_command>nextflow -version</version_command> 6 <version_command>nextflow -version</version_command>
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 mkdir -p queries references .nextflow 8 mkdir -p queries references .nextflow
9 && sed "s/@CORES@/\${GALAXY_SLOTS:-1}/" $__tool_directory__/nextflow.tmpl > nextflow_gal25.config 9 && sed "s/@CORES@/\${GALAXY_SLOTS:-1}/" $__tool_directory__/nextflow.tmpl > nextflow_gal25.config