Mercurial > repos > galaxytrakr > cfsan2snp2

comparison Dockerfile @ 2:dcd06ca636af draft

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planemo upload commit bca848313d4d1d906e34f040c2fc5f602dabb0e2
author galaxytrakr
date Fri, 13 Mar 2026 21:29:47 +0000
parents ea58bc28a64f
children 41947f5498b4
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1:ea58bc28a64f 2:dcd06ca636af
52 ADD https://github.com/marbl/Mash/releases/download/v${MASH_VER}/mash-Linux64-v${MASH_VER}.tar . 52 ADD https://github.com/marbl/Mash/releases/download/v${MASH_VER}/mash-Linux64-v${MASH_VER}.tar .
53 # iqtree2 53 # iqtree2
54 ADD https://github.com/Cibiv/IQ-TREE/releases/download/v${IQTREE_VER}/iqtree-${IQTREE_VER}-Linux.tar.gz . 54 ADD https://github.com/Cibiv/IQ-TREE/releases/download/v${IQTREE_VER}/iqtree-${IQTREE_VER}-Linux.tar.gz .
55 55
56 # ---- Build/install tools into /usr/local ---- 56 # ---- Build/install tools into /usr/local ----
57
57 # bedtools 58 # bedtools
58 RUN tar -xzf v${BEDTOOLS_VER}.tar.gz && rm v${BEDTOOLS_VER}.tar.gz && \ 59 RUN tar -xzf v${BEDTOOLS_VER}.tar.gz && rm v${BEDTOOLS_VER}.tar.gz && \
59 cd bedtools2-${BEDTOOLS_VER} && make -j && make install 60 cd bedtools2-${BEDTOOLS_VER} && make -j && make install
60 61
61 # Install MUMmer and copy Perl modules where dnadiff expects them 62 # Install MUMmer and copy Perl modules where dnadiff expects them