Mercurial > repos > galaxytrakr > cfsan2snp2

comparison Dockerfile @ 1:ea58bc28a64f draft

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planemo upload commit c57d3d891ef37fbeab5d081cbc33d95ab7670686
author galaxytrakr
date Fri, 13 Mar 2026 21:26:54 +0000
parents 8e7a84e62b43
children dcd06ca636af
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0:8e7a84e62b43 1:ea58bc28a64f
38 # Core Python packages 38 # Core Python packages
39 RUN pip install --no-cache-dir -U \ 39 RUN pip install --no-cache-dir -U \
40 pandas~=1.2.0 pybedtools refchooser scikit-learn 40 pandas~=1.2.0 pybedtools refchooser scikit-learn
41 41
42 # ---- Fetch sources/artifacts ---- 42 # ---- Fetch sources/artifacts ----
43
44 # bedtools 43 # bedtools
45 ADD https://github.com/arq5x/bedtools2/archive/refs/tags/v${BEDTOOLS_VER}.tar.gz . 44 ADD https://github.com/arq5x/bedtools2/archive/refs/tags/v${BEDTOOLS_VER}.tar.gz .
46 # mummer 45 # mummer
47 ADD https://github.com/mummer4/mummer/releases/download/v${MUMMER_VER}rc1/mummer-${MUMMER_VER}rc1.tar.gz . 46 ADD https://github.com/mummer4/mummer/releases/download/v${MUMMER_VER}rc1/mummer-${MUMMER_VER}rc1.tar.gz .
48 # skesa prebuilt bins 47 # skesa prebuilt bins