Mercurial > repos > galaxytrakr > cfsan2snp2

comparison Dockerfile @ 10:ec50b4ed004c draft

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planemo upload commit 73945687c1471741694cf99bbcdb8465ab5110f6
author galaxytrakr
date Thu, 19 Mar 2026 13:32:08 +0000
parents 0bf7e9b50206
children 2f515550dc87
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9:0bf7e9b50206 10:ec50b4ed004c
38 # Core Python packages 38 # Core Python packages
39 RUN pip install --no-cache-dir -U \ 39 RUN pip install --no-cache-dir -U \
40 pandas~=1.2.0 pybedtools refchooser scikit-learn 40 pandas~=1.2.0 pybedtools refchooser scikit-learn
41 41
42 # ---- Fetch sources/artifacts ---- 42 # ---- Fetch sources/artifacts ----
43
44 # bedtools 43 # bedtools
45 ADD https://github.com/arq5x/bedtools2/archive/refs/tags/v${BEDTOOLS_VER}.tar.gz . 44 ADD https://github.com/arq5x/bedtools2/archive/refs/tags/v${BEDTOOLS_VER}.tar.gz .
46 # mummer 45 # mummer
47 ADD https://github.com/mummer4/mummer/releases/download/v${MUMMER_VER}rc1/mummer-${MUMMER_VER}rc1.tar.gz . 46 ADD https://github.com/mummer4/mummer/releases/download/v${MUMMER_VER}rc1/mummer-${MUMMER_VER}rc1.tar.gz .
48 # skesa prebuilt bins 47 # skesa prebuilt bins