Mercurial > repos > galaxytrakr > cfsan2snp2

comparison cfsan2snp-screen.xml @ 8:f63e409bdc49 draft

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planemo upload commit 93cadd04d8ac84fb768c27cb02bcc540a3903d72
author galaxytrakr
date Sat, 14 Mar 2026 02:01:02 +0000
parents 30b679ab4600
children ec50b4ed004c
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7:30b679ab4600 8:f63e409bdc49
1 <tool id="cfsan2snp-screen" name="CSP2 (Screening Mode)" version="0.9.7.7+gt_0.8"> 1 <tool id="cfsan2snp-screen" name="CSP2 (Screening Mode)" version="0.9.7.7+gt_0.8">
2 <description>Screen query assemblies against reference assemblies</description> 2 <description>Screen query assemblies against reference assemblies</description>
3 <requirements> 3 <requirements>
4 <container type="docker">quay.io/galaxytrakr/cfsan2snp2:6f6cee1</container> 4 <container type="docker">quay.io/galaxytrakr/cfsan2snp2:v.0.9.7.7</container>
5 </requirements> 5 </requirements>
6 <version_command>nextflow -version</version_command> 6 <version_command>nextflow -version</version_command>
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 mkdir -p queries references .nextflow 8 mkdir -p queries references .nextflow
9 && sed "s/@CORES@/\${GALAXY_SLOTS:-1}/" $__tool_directory__/nextflow.tmpl > nextflow_gal25.config 9 && sed "s/@CORES@/\${GALAXY_SLOTS:-1}/" $__tool_directory__/nextflow.tmpl > nextflow_gal25.config