Mercurial > repos > galaxytrakr > cfsan2snp2

comparison cfsan2snp-snp.xml @ 8:f63e409bdc49 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 93cadd04d8ac84fb768c27cb02bcc540a3903d72
author galaxytrakr
date Sat, 14 Mar 2026 02:01:02 +0000
parents 30b679ab4600
children ec50b4ed004c
comparison
equal deleted inserted replaced
7:30b679ab4600 8:f63e409bdc49
1 <tool id="cfsan2snp-snp" name="CSP2 (SNP Pipeline Mode)" version="0.9.7.7+gt_0.8"> 1 <tool id="cfsan2snp-snp" name="CSP2 (SNP Pipeline Mode)" version="0.9.7.7+gt_0.8">
2 <description>Run SNP Pipeline analysis on isolates using one or more references.</description> 2 <description>Run SNP Pipeline analysis on isolates using one or more references.</description>
3 <requirements> 3 <requirements>
4 <container type="docker">quay.io/galaxytrakr/cfsan2snp2:6f6cee1</container> 4 <container type="docker">quay.io/galaxytrakr/cfsan2snp2:v.0.9.7.7</container>
5 </requirements> 5 </requirements>
6 <version_command>nextflow -version</version_command> 6 <version_command>nextflow -version</version_command>
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 mkdir -p queries references .nextflow 8 mkdir -p queries references .nextflow
9 && sed "s/@CORES@/\${GALAXY_SLOTS:-1}/" $__tool_directory__/nextflow.tmpl > nextflow_gal25.config 9 && sed "s/@CORES@/\${GALAXY_SLOTS:-1}/" $__tool_directory__/nextflow.tmpl > nextflow_gal25.config