Mercurial > repos > galaxytrakr > data_manager_build_staramr

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author galaxytrakr
date Thu, 26 Mar 2026 19:31:12 +0000
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1 <?xml version="1.0"?>
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2 <data_managers>
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3 <data_manager tool_file="data_manager/data_manager_build_staramr_download.xml" id="data_manager_build_staramr_download">
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4 <data_table name="staramr_database"> <!-- Defines a Data Table to be modified. -->
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5 <output> <!-- Handle the output of the Data Manager Tool -->
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6 <column name="value"/> <!-- columns that are going to be specified by the Data Manager Tool -->
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7 <column name="name"/> <!-- columns that are going to be specified by the Data Manager Tool -->
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8 <column name="path" output_ref="out_file">
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9 <move type="directory">
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10 <source>${path}</source>
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11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">staramr/${path}</target>
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12 </move>
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13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/staramr/${path}</value_translation>
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14 <value_translation type="function">abspath</value_translation>
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15 </column>
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16 <column name="resfinder_commit"/> <!-- columns that are going to be specified by the Data Manager Tool -->
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17 <column name="pointfinder_commit"/> <!-- columns that are going to be specified by the Data Manager Tool -->
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18 <column name="plasmidfinder_commit"/> <!-- columns that are going to be specified by the Data Manager Tool -->
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19 </output>
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20 </data_table>
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21 </data_manager>
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22 </data_managers>