Mercurial > repos > galaxytrakr > data_manager_humann2_database_downloader

diff data_manager_conf.xml @ 0:4f93334e2a83 draft default tip

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planemo upload commit 494109a0410b49a6d05b5b0aa61639b16893bd04
author galaxytrakr
date Thu, 26 Mar 2026 20:05:32 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_conf.xml	Thu Mar 26 20:05:32 2026 +0000
@@ -0,0 +1,33 @@
+<?xml version="1.0"?>
+<data_managers>
+    <data_manager tool_file="data_manager/data_manager_humann2_download.xml" id="data_manager_humann2_download" >
+        <data_table name="humann2_nucleotide_database">  <!-- Defines a Data Table to be modified. -->
+            <output> <!-- Handle the output of the Data Manager Tool -->
+                <column name="value" />  <!-- columns that are going to be specified by the Data Manager Tool -->
+                <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
+                <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
+                <column name="path" output_ref="out_file" >
+                    <move type="directory">
+                        <source>${path}</source>
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">humann2/data/nucleotide_database/${dbkey}</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/humann2/data/nucleotide_database/${dbkey}</value_translation>
+                </column>
+            </output>
+        </data_table>
+        <data_table name="humann2_protein_database">  <!-- Defines a Data Table to be modified. -->
+            <output> <!-- Handle the output of the Data Manager Tool -->
+                <column name="value" />  <!-- columns that are going to be specified by the Data Manager Tool -->
+                <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
+                <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
+                <column name="path" output_ref="out_file" >
+                    <move type="directory">
+                        <source>${path}</source>
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">humann2/data/protein_database/${dbkey}</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/humann2/data/protein_database/${dbkey}</value_translation>
+                </column>
+            </output>
+        </data_table>
+    </data_manager>
+</data_managers>
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