|
0
|
1 # NextFlow DSL2 Module
|
|
|
2
|
|
|
3 ```bash
|
|
|
4 DUMP_SOFTWARE_VERSIONS
|
|
|
5 ```
|
|
|
6
|
|
|
7 ## Description
|
|
|
8
|
|
|
9 Given an `YAML` format file, produce a final `.yml` file which has unique entries and a corresponding `.mqc.yml` file for use with `multiqc`.
|
|
|
10
|
|
|
11 \
|
|
|
12
|
|
|
13
|
|
|
14 ### `input:`
|
|
|
15
|
|
|
16 ___
|
|
|
17
|
|
|
18 Type: `path`
|
|
|
19
|
|
|
20 Takes in a `path` (`versions`) type pointing to the file to be used to produce a final `.yml` file without any duplicate entries and a `.mqc.yml` file. Generally, this is passed by mixing `versions` from various run time channels and finally passed to this module to produce a final software versions list.
|
|
|
21
|
|
|
22 Ex:
|
|
|
23
|
|
|
24 ```groovy
|
|
|
25 [ '/hpc/scratch/test/work/9b/e7bf7e28806419c1c9a571dacd1f67/versions.yml' ]
|
|
|
26 ```
|
|
|
27
|
|
|
28 \
|
|
|
29
|
|
|
30
|
|
|
31 ### `output:`
|
|
|
32
|
|
|
33 ___
|
|
|
34
|
|
|
35 #### `yml`
|
|
|
36
|
|
|
37 Type: `path`
|
|
|
38
|
|
|
39 NextFlow output type of `path` type pointing to an `YAML` file with software versions.
|
|
|
40
|
|
|
41 \
|
|
|
42
|
|
|
43
|
|
|
44 #### `mqc_yml`
|
|
|
45
|
|
|
46 Type: `path`
|
|
|
47
|
|
|
48 NextFlow output type of `path` pointing to `.mqc.yml` file which can be used to produce a software versions' table with `multiqc`.
|
|
|
49
|
|
|
50 \
|
|
|
51
|
|
|
52
|
|
|
53 #### `versions`
|
|
|
54
|
|
|
55 Type: `path`
|
|
|
56
|
|
|
57 NextFlow output type of `path` pointing to the `.yml` file storing software versions for this process.
|