Mercurial > repos > galaxytrakr > hfp_bettercallsal_awsbatch

comparison 1.0.0/conf/base.config @ 0:801b85b03a17 draft default tip

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author galaxytrakr
date Thu, 28 May 2026 20:31:42 +0000
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-1:000000000000 0:801b85b03a17
1 plugins {
2 id 'nf-amazon'
3 }
4
5 params {
6 fs = File.separator
7 cfsanpipename = 'CPIPES'
8 center = 'CFSAN, FDA.'
9 libs = "${projectDir}${params.fs}lib"
10 modules = "${projectDir}${params.fs}modules"
11 projectconf = "${projectDir}${params.fs}conf"
12 assetsdir = "${projectDir}${params.fs}assets"
13 subworkflows = "${projectDir}${params.fs}subworkflows"
14 workflows = "${projectDir}${params.fs}workflows"
15 workflowsconf = "${workflows}${params.fs}conf"
16 routines = "${libs}${params.fs}routines"
17 toolshelp = "${libs}${params.fs}help"
18 swmodulepath = "${params.fs}nfs${params.fs}software${params.fs}modules"
19 tracereportsdir = "${launchDir}${params.fs}${cfsanpipename}-${params.pipeline}${params.fs}nextflow-reports"
20 dummyfile = "${projectDir}${params.fs}assets${params.fs}dummy_file.txt"
21 dummyfile2 = "${projectDir}${params.fs}assets${params.fs}dummy_file2.txt"
22 max_cpus = 10
23 linewidth = 80
24 pad = 32
25 pipeline = null
26 help = null
27 input = null
28 output = null
29 metadata = null
30 publish_dir_mode = "copy"
31 publish_dir_overwrite = true
32 user_email = null
33 }
34
35 dag {
36 enabled = true
37 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_dag.html"
38 overwrite = true
39 }
40
41 report {
42 enabled = true
43 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_exec_report.html"
44 overwrite = true
45 }
46
47 trace {
48 enabled = true
49 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_exec_trace.txt"
50 overwrite = true
51 }
52
53 timeline {
54 enabled = true
55 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_exec_timeline.html"
56 overwrite = true
57 }
58