--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/1.0.0/conf/computeinfra.config	Thu May 28 20:31:42 2026 +0000
@@ -0,0 +1,197 @@
+standard {
+    process.executor = 'local'
+    process.cpus = 1
+    params.enable_conda = false
+    params.enable_module = true
+    singularity.enabled = false
+    docker.enabled = false
+}
+
+stdkondagac {
+    process.executor = 'local'
+    process.cpus = 4
+    params.enable_conda = true
+    conda.enabled = true
+    conda.useMicromamba = true
+    params.enable_module = false
+    singularity.enabled = false
+    docker.enabled = false
+}
+
+stdcingularitygac {
+    process.executor = 'local'
+    process.cpus = 4
+    params.enable_conda = false
+    params.enable_module = false
+    singularity.enabled = true
+    singularity.autoMounts = true
+    singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
+    docker.enabled = false
+}
+
+raven {
+    process.executor = 'slurm'
+    process.queue = 'prod'
+    process.memory = '10GB'
+    process.cpus = 4
+    params.enable_conda = false
+    params.enable_module = true
+    singularity.enabled = false
+    docker.enabled = false
+    clusterOptions = '--signal B:USR2'
+}
+
+eprod {
+    process.executor = 'slurm'
+    process.queue = 'combined'
+    process.memory = '10GB'
+    process.cpus = 4
+    params.enable_conda = false
+    params.enable_module = true
+    singularity.enabled = false
+    docker.enabled = false
+    clusterOptions = '--signal B:USR2'
+}
+
+eprodkonda {
+    process.executor = 'slurm'
+    process.queue = 'lowmem,midmem,bigmem'
+    process.memory = '10GB'
+    process.cpus = 4
+    params.enable_conda = true
+    conda.enabled = true
+    conda.useMicromamba = true
+    params.enable_module = false
+    singularity.enabled = false
+    singularity.autoMounts = true
+    singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
+    docker.enabled = false
+    clusterOptions = '--signal B:USR2'
+}
+
+eprodcingularity {
+    process.executor = 'slurm'
+    process.queue = 'lowmem,midmem,bigmem'
+    process.memory = '10GB'
+    process.cpus = 4
+    params.enable_conda = false
+    params.enable_module = false
+    singularity.enabled = true
+    singularity.autoMounts = true
+    singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
+    docker.enabled = false
+    clusterOptions = '--signal B:USR2'
+}
+
+cingularity {
+    process.executor = 'slurm'
+    process.queue = 'prod'
+    process.memory = '10GB'
+    process.cpus = 4
+    singularity.enabled = true
+    singularity.autoMounts = true
+    singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
+    docker.enabled = false
+    params.enable_conda = false
+    params.enable_module = false
+    clusterOptions = '--signal B:USR2'
+}
+
+cingularitygac {
+    process.executor = 'slurm'
+    executor.$slurm.exitReadTimeout = 120000
+    process.queue = 'centriflaken'
+    process.cpus = 4
+    singularity.enabled = true
+    singularity.autoMounts = true
+    singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
+    docker.enabled = false
+    params.enable_conda = false
+    params.enable_module = false
+    clusterOptions = '-n 1 --signal B:USR2'
+}
+
+konda {
+    process.executor = 'slurm'
+    process.queue = 'prod'
+    process.memory = '10GB'
+    process.cpus = 4
+    singularity.enabled = false
+    docker.enabled = false
+    params.enable_conda = true
+    conda.enabled = true
+    conda.useMicromamba = true
+    params.enable_module = false
+    clusterOptions = '--signal B:USR2'
+}
+
+kondagac {
+    process.executor = 'slurm'
+    executor.$slurm.exitReadTimeout = 120000
+    process.queue = 'centriflaken'
+    process.cpus = 4
+    singularity.enabled = false
+    docker.enabled = false
+    params.enable_conda = true
+    conda.enabled = true
+    conda.useMicromamba = true
+    params.enable_module = false
+    clusterOptions = '-n 1 --signal B:USR2'
+}
+
+hfpawsbatch {
+    process.executor = 'awsbatch'
+    process.queue = 'hfp-galaxy-nf-ec2-dev'
+    aws.batch.region = 'us-east-1'
+    aws.batch.cliPath = '/home/ec2-user/.pixi/bin/aws'
+    aws.batch.volumes = ['/app/galaxy/data/jobs_directory:/app/galaxy/data/jobs_directory:rw', '/app/galaxy/data/objects:/app/galaxy/data/objects:ro']
+    aws.batch.maxTransferAttempts = 5
+    aws.batch.delayBetweenAttempts = '30 sec'
+    aws.batch.maxParallelTransfers = 5
+    aws.batch.retryMode = 'adaptive'
+    aws.client.connectionTimeout = 30000
+    aws.client.socketTimeout = 120000
+    singularity.enabled = false
+    singularity.autoMounts = true
+    docker.enabled = true
+    params.enable_conda = false
+    conda.enabled = false
+    conda.useMicromamba = false
+    params.enable_module = false
+}
+
+cdrhsingularity {
+    process.executor = 'slurm'
+    process.memory = '10GB'
+    process.cpus = 4
+    params.enable_conda = false
+    params.enable_module = false
+    singularity.enabled = true
+    singularity.autoMounts = true
+    singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
+    docker.enabled = false
+    clusterOptions = '--signal B:USR2'
+}
+
+cdrhslurmconda {
+    process.executor = 'slurm'
+    process.memory = '100GB'
+    process.cpus = 12
+    singularity.enabled = false
+    docker.enabled = false
+    params.enable_conda = true
+    conda.enabled = true
+    conda.useMicromamba = true
+    params.enable_module = false
+    clusterOptions = '--signal B:USR2 -t 3-00:00:00'
+}
+
+hfpawsbatchsingularity {
+    process.executor = 'local'
+    params.enable_conda = false
+    params.enable_module = false
+    singularity.enabled = true
+    singularity.autoMounts = true
+    singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
+    docker.enabled = false
+}