standard {
    process.executor = 'local'
    process.cpus = 1
    params.enable_conda = false
    params.enable_module = true
    singularity.enabled = false
    docker.enabled = false
}

stdkondagac {
    process.executor = 'local'
    process.cpus = 4
    params.enable_conda = true
    conda.enabled = true
    conda.useMicromamba = true
    params.enable_module = false
    singularity.enabled = false
    docker.enabled = false
}

stdcingularitygac {
    process.executor = 'local'
    process.cpus = 4
    params.enable_conda = false
    params.enable_module = false
    singularity.enabled = true
    singularity.autoMounts = true
    singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
    docker.enabled = false
}

raven {
    process.executor = 'slurm'
    process.queue = 'prod'
    process.memory = '10GB'
    process.cpus = 4
    params.enable_conda = false
    params.enable_module = true
    singularity.enabled = false
    docker.enabled = false
    clusterOptions = '--signal B:USR2'
}

eprod {
    process.executor = 'slurm'
    process.queue = 'combined'
    process.memory = '10GB'
    process.cpus = 4
    params.enable_conda = false
    params.enable_module = true
    singularity.enabled = false
    docker.enabled = false
    clusterOptions = '--signal B:USR2'
}

eprodkonda {
    process.executor = 'slurm'
    process.queue = 'lowmem,midmem,bigmem'
    process.memory = '10GB'
    process.cpus = 4
    params.enable_conda = true
    conda.enabled = true
    conda.useMicromamba = true
    params.enable_module = false
    singularity.enabled = false
    singularity.autoMounts = true
    singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
    docker.enabled = false
    clusterOptions = '--signal B:USR2'
}

eprodcingularity {
    process.executor = 'slurm'
    process.queue = 'lowmem,midmem,bigmem'
    process.memory = '10GB'
    process.cpus = 4
    params.enable_conda = false
    params.enable_module = false
    singularity.enabled = true
    singularity.autoMounts = true
    singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
    docker.enabled = false
    clusterOptions = '--signal B:USR2'
}

cingularity {
    process.executor = 'slurm'
    process.queue = 'prod'
    process.memory = '10GB'
    process.cpus = 4
    singularity.enabled = true
    singularity.autoMounts = true
    singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
    docker.enabled = false
    params.enable_conda = false
    params.enable_module = false
    clusterOptions = '--signal B:USR2'
}

cingularitygac {
    process.executor = 'slurm'
    executor.$slurm.exitReadTimeout = 120000
    process.queue = 'centriflaken'
    process.cpus = 4
    singularity.enabled = true
    singularity.autoMounts = true
    singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
    docker.enabled = false
    params.enable_conda = false
    params.enable_module = false
    clusterOptions = '-n 1 --signal B:USR2'
}

konda {
    process.executor = 'slurm'
    process.queue = 'prod'
    process.memory = '10GB'
    process.cpus = 4
    singularity.enabled = false
    docker.enabled = false
    params.enable_conda = true
    conda.enabled = true
    conda.useMicromamba = true
    params.enable_module = false
    clusterOptions = '--signal B:USR2'
}

kondagac {
    process.executor = 'slurm'
    executor.$slurm.exitReadTimeout = 120000
    process.queue = 'centriflaken'
    process.cpus = 4
    singularity.enabled = false
    docker.enabled = false
    params.enable_conda = true
    conda.enabled = true
    conda.useMicromamba = true
    params.enable_module = false
    clusterOptions = '-n 1 --signal B:USR2'
}

hfpawsbatch {
    process.executor = 'awsbatch'
    process.queue = 'hfp-galaxy-nf-ec2-dev'
    aws.batch.region = 'us-east-1'
    aws.batch.cliPath = '/home/ec2-user/.pixi/bin/aws'
    aws.batch.volumes = ['/app/galaxy/data/jobs_directory:/app/galaxy/data/jobs_directory:rw', '/app/galaxy/data/objects:/app/galaxy/data/objects:ro']
    aws.batch.maxTransferAttempts = 5
    aws.batch.delayBetweenAttempts = '30 sec'
    aws.batch.maxParallelTransfers = 5
    aws.batch.retryMode = 'adaptive'
    aws.client.connectionTimeout = 30000
    aws.client.socketTimeout = 120000
    singularity.enabled = false
    singularity.autoMounts = true
    docker.enabled = true
    params.enable_conda = false
    conda.enabled = false
    conda.useMicromamba = false
    params.enable_module = false
}

cdrhsingularity {
    process.executor = 'slurm'
    process.memory = '10GB'
    process.cpus = 4
    params.enable_conda = false
    params.enable_module = false
    singularity.enabled = true
    singularity.autoMounts = true
    singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
    docker.enabled = false
    clusterOptions = '--signal B:USR2'
}

cdrhslurmconda {
    process.executor = 'slurm'
    process.memory = '100GB'
    process.cpus = 12
    singularity.enabled = false
    docker.enabled = false
    params.enable_conda = true
    conda.enabled = true
    conda.useMicromamba = true
    params.enable_module = false
    clusterOptions = '--signal B:USR2 -t 3-00:00:00'
}

hfpawsbatchsingularity {
    process.executor = 'local'
    params.enable_conda = false
    params.enable_module = false
    singularity.enabled = true
    singularity.autoMounts = true
    singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
    docker.enabled = false
}